cinaR is a single wrapper function for end-to-end computational analyses of bulk ATAC-seq (or RNA-seq) profiles. Starting from a consensus peak file, it outputs differentially accessible peaks, enrichment results, and provides users with various configurable visualization options. For more details, please see the preprint.
# CRAN mirror install.packages("cinaR")
To get bug fix and use a feature from the development version:
# install.packages("devtools") devtools::install_github("eonurk/cinaR")
Sometimes bioconductor related packages may not be installed automatically.
Therefore, you may need to install them manually: