- Added:
-
comparison.scheme
either set to OVO
(default) which will compare each contrasts to each other. If it’s set to OVA
each contrast will be compared to rest.
- Added:
- An extra argument
sv.number
is added if user wants to set the number of surrogate variables.
More info here.
-
verbose
argument, default set to TRUE
. I think, I have implemented this in a really cool way!
-
cinaRgenesets
added to vignette.
- Added:
-
heatmap_differential
function to be able to plot the heatmaps of a given comparison.
-
show_comparisons
is added to see the available comparisons before you plot differential heatmaps.
- Changed:
-
heatmap_plot
is now renamed to heatmap_var_peaks
, which makes more sense.
This version is even cooler, lol:
- Comparisons are now sorted according to
contrast
order
- Added bulk RNA-seq support/documentation
- Removed many dependencies
- Small bug fixes and improvements
-
cinaR
is published in CRAN repository!