Normalize (z-score) rows of a matrix
scale_rows(x)a matrix, possibly containing gene by samples
Row-normalized matrix
# \donttest{
library(cinaR)
data(atac_seq_consensus_bm) # calls 'bed'
bed.row.normalized <- scale_rows(bed[,c(4:25)])
head(bed.row.normalized)
#> B6-18mo-M-BM-47-GT18-01783 B6-18mo-F-BM-42-GT18-01780
#> 52834 1.0992670 0.4518863
#> 29780 -1.0422681 -1.7648489
#> 67290 1.1823472 0.3326022
#> 51295 0.8786799 -0.1096104
#> 4267 1.1855512 0.2835383
#> 45102 0.3550758 0.2434806
#> B6-18mo-M-BM-45-GT18-01781 B6-18mo-F-BM-40-GT18-01778
#> 52834 -0.3910777 2.1456376
#> 29780 -1.4999026 -1.2831284
#> 67290 -0.1394783 2.0320921
#> 51295 -0.9002426 2.3018180
#> 4267 -0.6213518 1.9393865
#> 45102 -1.5420436 0.4666711
#> B6-18mo-F-BM-41-GT18-01779 NZO-18mo-F-BM-35-GT18-03804
#> 52834 1.6429885 -0.13486357
#> 29780 -0.8977519 0.76418396
#> 67290 -0.2338944 0.42701831
#> 51295 0.3647690 0.56242704
#> 4267 1.5293806 -0.17394187
#> 45102 -0.1471028 0.07608768
#> NZO-18mo-F-BM-36-GT18-03805 NZO-18mo-F-BM-42-GT18-03806
#> 52834 -0.01751359 -0.6492476
#> 29780 1.17364643 1.1977325
#> 67290 0.56864247 -0.1866864
#> 51295 0.04851607 -0.5444581
#> 4267 -0.18113496 -0.4947535
#> 45102 -0.20290047 0.1876829
#> NZO-18mo-M-BM-38-GT18-03807 NZO-18mo-M-BM-39-GT18-03808
#> 52834 -0.5983960 -0.883947562
#> 29780 1.1736464 -0.126999054
#> 67290 -0.4699347 0.002145821
#> 51295 0.4438322 0.285705747
#> 4267 -0.7163005 -0.963742604
#> 45102 1.0246474 -0.202900469
#> NZO-18mo-M-BM-40-GT18-03809 B6-3mo-F-BM-4-GT18-04678
#> 52834 -0.97978337 1.2087936
#> 29780 -0.05474097 -0.2715152
#> 67290 -1.08363942 1.0879311
#> 51295 -0.54445812 1.2739961
#> 4267 -1.15507866 1.5034855
#> 45102 -0.48188861 -0.2586981
#> B6-3mo-F-BM-5-GT18-04679 B6-3mo-M-BM-1-GT18-04680
#> 52834 -0.7763768 2.237562
#> 29780 -0.9459240 1.221818
#> 67290 -0.6115589 2.598589
#> 51295 -0.7421162 1.946033
#> 4267 -0.9507951 2.253005
#> 45102 -0.3702934 3.479743
#> B6-3mo-M-BM-2-GT18-04681 B6-3mo-M-BM-3-GT18-04682
#> 52834 -0.7509509 -0.4751785
#> 29780 -1.0904402 0.4510656
#> 67290 -0.2338944 -0.5643508
#> 51295 -0.5444581 0.6019586
#> 4267 -0.6803351 -0.2976629
#> 45102 -0.5376862 -0.2029005
#> NZO-3mo-F-BM-245-GT18-10918 NZO-3mo-F-BM-243-GT18-10916
#> 52834 -0.5221185 -0.49864848
#> 29780 -0.0788270 0.08977519
#> 67290 -0.8475992 -0.56435083
#> 51295 -0.5444581 -1.61181167
#> 4267 -0.2732064 -0.59401804
#> 45102 -0.5376862 -0.76087676
#> NZO-3mo-M-BM-251-GT18-10919 NZO-3mo-M-BM-253-GT18-10921
#> 52834 -0.5729701 -0.2580810
#> 29780 0.5474097 0.2583774
#> 67290 -1.4613039 -0.7059750
#> 51295 -1.4536852 -0.7816478
#> 4267 -0.5335961 -0.1624329
#> 45102 -0.9282696 -0.9282696
#> NZO-3mo-F-BM-244-GT18-10917 NZO-3mo-M-BM-252-GT18-10920
#> 52834 -0.64142428 -0.6355568
#> 29780 0.49923766 1.6794530
#> 67290 -0.98922332 -0.1394783
#> 51295 -0.70258457 -0.2282052
#> 4267 -0.52496442 -0.3710324
#> 45102 0.02029005 1.2478379
# }